When I bought my Game Cube the Zelda: Collector's Edition was included right in the box. It was available for purchase right then and there. You had to buy a Game Cube to get it, but you still could purchase it. The Master Quest, well, thats a different story. If it came packaged with Windwaker, then you could purchase it, and it counts.
zelda collector's edition came bundled with systems
I stand corrected.